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Laboratory for Laser Molecular Imaging and Machine Learning

Contract number
075-15-2021-615
Time span of the project
2021-2023
Head of the laboratory

As of 01.12.2023

52
Number of staff members
19
scientific publications
4
Objects of intellectual property
General information

Name of the project: The development of methods of non-invasive screening diagnostics of viruses and bacterial respiratory infections using laser spectroscopy and artificial intelligence methods

Infectious diseases is one of the most critical threats to modern society. The objective of the project is the development of methods of non-invasive screening diagnostics of viruses and bacterial respiratory infections using laser spectroscopy and artificial intelligence (AI)methods.


Goals and objectives

Project objective:

Tasks of the project:

  1. The enhancement of artificial intelligence methods and the instrumental base of laser molecular spectroscopy.
  2. The development of methods of non-invasive screening diagnostics of viruses and bacterial respiratory infections on the basis of the spectral analysis of exhaled air using laser spectroscopy and artificial intelligence methods.
  3. The development of methods of non-invasive screening diagnostics of viruses and bacterial respiratory infections based on the spectral analysis of biological fluids using laser spectroscopy and artificial intelligence methods. The solution of the second and the third problem should include: the development of a protocol for experimental research; the selection of a group of patients with target diseases, the collection and the instrumental analysis of samples; the determination of informative features, the development and the validation of predictive models.
  4. The development of provocative tests for the assessment of the presence of viral respiratory infections on the mucosa of the oral cavity and and the bronchopulmonary system using laser spectroscopy.

The practical value of the study

Scientific results:

An approach based on machine learning and spectral taxonomy methods, super-resolution reconstruction methods, deep neural networks to content analysis of the spectra of multicomponent samples based on spectral patterns and a priori information on the spectral characteristics of individual components, and the development of predictive models for subsequent classification was developed. Methods for screening non-invasive diagnostics of viral and bacterial respiratory infections based on spectral analysis:

  • exhaled air using laser optical-acoustic spectroscopy and AI methods;
  • biological fluids using laser Raman spectroscopy and AI methods were developed. A provocative test for assessing the presence of viral respiratory infections on the mucous membrane of the oral cavity and bronchopulmonary system using laser spectroscopy was developed.

Implementation of research results:

Negotiations are underway with potential investors on the implementation of medical diagnostics technology based on spectral analysis of exhaled air samples using laser optical-acoustic spectroscopy and machine learning.

Organizational and infrastructural changes:

As a result of the project implementation, a laboratory (analytical center) was created, equipped with scientific equipment for laser spectroscopy, specialized software implementing machine and deep learning in the field of creating predictive models for classifying laser spectroscopy data. For this purpose, the original laser gas analyzer was modernized, combining optical-acoustic detection and a laser source based on parametric light generation. A complex for Raman spectroscopy in the terahertz and IR regions was created, including in the mode of giant and locally enhanced Raman scattering spectroscopy.

Education and personnel occupational retraining:

In 2021, two programs of the discipline were developed and implemented into the educational process as part of the implementation of the master's program:

  • "Medical diagnostics using machine learning and biophotonics".
  • "Introduction to bioinformatics".

In 2022, two programs of the discipline were developed and implemented into the educational process as part of the implementation of the master's program:

  • "Mathematical models of biophotonics methods".
  • "Visualization methods in biology and medicine".

In 2022, the Candidate Exam Program in the scientific specialty 1.3.21 Medical Physics was developed and implemented into the educational process.

In 2023, three programs of the discipline were developed and implemented into the educational process as part of the implementation of the master's program:

  • "Mathematical models of biophotonics methods".
  • "Visualization methods in biology and medicine".
  • "Neurophotonics".

As a result of the project implementation, 5 dissertations for the degree of candidate of physical and mathematical sciences, 6 master's dissertations, and 3 bachelor's degrees were defended.

The laboratory staff, under the guidance of the leading scientist, completed 2 scientific internships: at the Lomonosov Moscow State University on the topic of "Analysis of THz spectra of exhaled air using machine learning methods" (Russia, Moscow), at the Institute of Laser and Information Technology Problems of the Russian Academy of Sciences on the topic of "Creation of an optical-acoustic detector based on a quartz resonator" (Russia, Shatura).

Cooperation:

  • University at Albany (SUNY, USA).
  • University of Lorraine (France).
  • Lomonosov Moscow State University.
  • Saratov National Research University named after N.G. Chernyshevsky

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Fernandes L., Carvalho S., Carneiro I., Henrique R., Tuchin V.V., Oliveira H.P., Oliveira L.
Diffuse reflectance and machine learning techniques to differentiate colorectal cancer ex vivo // Chaos. 2021. Vol. 31, Iss. 5. Article number 053118. DOI: 10.1063/5.0052088.
Borisov A.V., Syrkina A.G., Kuz`min D.A., Ryabov V.V., Boyko A.A., Zaharova O., Zasedatel` V.S., Kistenev Y.V.
Application of machine learning and laser optical-acoustic spectroscopy to study the profile of exhaled air volatile markers of acute myocardial infarction // Journal of Breath Research. 2021. Vol. 15, Iss. 2. P. 1752-7163. DOI: 10.1088/1752-7163/abebd4.
Zuhayri Hala, Nikolaev V.V., Lepekhina T.B., Sandykova E.A., Krivova N.A., Kistenev Y.V.
The In Vivo Quantitative Assessment of the Effectiveness of Low-Dose Photodynamic Therapy on Wound Healing Using Optical Coherence Tomography // Pharmaceutics. 2022. Vol. 14, Iss. 2. Article number 399. DOI: 10.3390/pharmaceutics14020399.
Zuhayri Hala, Nikolaev V.V., Knyazkova A.I., Lepekhina T.B., Krivova N.A., Tuchin V.V., Kistenev Yu.V.
In Vivo Quantification of the Effectiveness of Topical Low-Dose Photodynamic Therapy in Wound Healing Using Two-Photon Microscopy // Pharmaceutics. 2022. Vol. 14, Iss 2. Article number 287. DOI: 10.3390/pharmaceutics14020287.
Vrazhnov D., Mankova A., Stupak E., Kistenev Yu., Shkurinov A., Cherkasova O
Discovering Glioma Tissue through Its Biomarkers’ Detection in Blood by Raman Spectroscopy and Machine Learning // Pharmaceutics. 2023. Vol. 15, Iss. 1. Article number 203. DOI: 10.3390/pharmaceutics15010203.
Kistenev Yu.V., Borisov A.V., Samarinova A.A., Sonivette C.-R., Lednev I.K.
A novel Raman spectroscopic method for detecting traces of blood on an interfering substrate // Scientific Reports. 2023. Vol. 13. Article number 5384. DOI: 10.1038/s41598-023-31918-9
Patent for invention "Method for express diagnostics of acute myocardial infarction based on registration of volatile molecular markers in exhaled air"
Authors: Yuri Vladimirovich Kistenev, Aleksey Vladimirovich Borisov, Vyacheslav Sergeevich Zasedatel; date of registration – 27.05.2022.
Patent for invention "Complex for magnetically controlled amplitude-frequency modulation of terahertz radiation";
Authors: Zakhar Sergeevich Kochnev, Aleksey Vladimirovich Borisov, Yuri Vladimirovich Kistenev; date of registration – 14.02.2023.
Patent for the invention "Resonant differential optoacoustic detector"
Authors: Makashev Didar Ruslanovich, Borisov Aleksey Vladimirovich, Kistenev Yuri Vladimirovich, Raspopin Georgy Konstantinovich; date of registration – 08.06.2023.
Computer program "Computer program for restoring the spectral resolution of absorption spectra of gas mixtures in the IR range using artificial intelligence and deep neural networks"
Authors: Kistenev Yuri Vladimirovich, Skiba Viktor Evgenievich, Prishchepa Vladimir Vladimirovich, Vrazhnov Denis Aleksandrovich; date of registration – 25.06.2023.
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